Of course, birds have nothing to do with country boundaries, and bird populations should be considered as a whole across Europe. That is exactly what we do by weighing the national species indices based on the national population size estimates (from European Red List of Birds, BirdLife International 2021). This procedure warrants that each bird counted gets the same weight in the trends and indices, whether it lives in one country or another.
See more in Methods, chapter 2. Supranational species indices and trends:
2.1 Delivery of national data to PECBMS coordination unit